Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs13400411 chr2:178789432 C/T 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs13402238 chr2:10479921 T/C 1.64E-11 480 30.33 33.13 10.03 KM Plot
PRAD rs13407588 chr2:47167133 A/G 3.11E-6 491 30.8 32.4 36.77 KM Plot
PRAD rs13410185 chr2:178788266 T/C 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs13411527 chr2:178800699 C/T 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs13411542 chr2:178800739 C/T 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs13411922 chr2:178800922 A/G 4.13E-5 494 20.48 31.3 30.8 KM Plot
PRAD rs13411970 chr2:178801151 C/T 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs13413095 chr2:178788668 T/C 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs13413731 chr2:178789242 T/C 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs13419437 chr2:178774704 G/A 3.83E-5 494 30.33 35.33 20.48 KM Plot
PRAD rs13422276 chr2:178788527 A/G 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs13425873 chr2:178801514 T/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs13427912 chr2:178800429 G/A 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs13428032 chr2:178800522 A/G 4.13E-5 494 20.48 31.93 30.77 KM Plot